PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0660.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-other
Protein Properties Length: 1727aa    MW: 195285 Da    PI: 6.14
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0660.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182783257
                            T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                             kR+  t+ qle+Le++++  + yps+e+r+eL++klgL++rq ++WF+ rR k+kk
  SapurV1A.0012s0660.1.p 27 PKRQMKTPFQLETLEKAYAAaETYPSEEMRAELSEKLGLSDRQLQMWFCHRRLKDKK 83
                            69*****************99**********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-17884IPR009057Homeodomain-like
SuperFamilySSF466892.57E-151584IPR009057Homeodomain-like
PROSITE profilePS5007116.8112384IPR001356Homeobox domain
SMARTSM003891.2E-162588IPR001356Homeobox domain
PfamPF000462.2E-162783IPR001356Homeobox domain
CDDcd000861.06E-122884No hitNo description
PROSITE profilePS5082716.662515574IPR018501DDT domain
SMARTSM005714.3E-22515574IPR018501DDT domain
PfamPF027916.7E-18516571IPR018501DDT domain
PfamPF050664.5E-16699767IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156126.9E-7906949IPR028942WHIM1 domain
PfamPF156131.8E-1310881160IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1727 aa     Download sequence    Send to blast
MEANSDEEDH NRSKSNVMSS NEGQSKPKRQ MKTPFQLETL EKAYAAAETY PSEEMRAELS  60
EKLGLSDRQL QMWFCHRRLK DKKETPVKKQ RNAAPLPESP LEEMRVAGAE NGSDYGSGSG  120
SGSSPLSESR KVVLDDGHMM RRYYDSSPQS VMELRAIACV EAQLGEPLRE DGPILGMDFD  180
HLPPDAFGTP IASISEQQKR MGYSYEDKIY ERHDAKSSKD HASIRSDAYG LAQSPYHDSP  240
ADTLRGRASP FGAGQMPRAR LLSQQDKRGH IFSSPQRDDD FIPQRDTFAN NRTSAQSITH  300
PIMGPENPNV FSDAQTFHHD TELRLERKRK IEEPRTIRDV EAYESRMRKE LEKQDILRRK  360
NEERMRKEME RHDRERRKEE ERLMRERQRE EERTLREQKR EHERREKFMQ KEYLRAEKRR  420
QKEELRREKE AVKRKAAMEK ATARKIAKDS LDLIEDEQLE LMELAAASKG LASIVNLNYD  480
TLQNLDSFRD LLITFPSKSV QLKKPFGFQP WLDSEENIGN LLMVWRFFIT FADVLGLWPF  540
TLDEFVQAFH DYDSRLLSEL HIALLKLIIK DIEDVARTPS SGLGINQYYT ANPEGGHPQI  600
VRGAYTWGFD IRNWQQHLNP LTWPEILRQL ALSAGFGPQL RKRNATWTGL GDIDELQVKD  660
CEDIISTIRN GSAAENAFAL MREKGLLLPR RSRHRLTPGT VKFAAFHVLS LEGSKGLTVL  720
ELADKIQKSG LRDLTTSKTP EASISVALTR DQKLFERIAP STYCLRAAFR KDPADAEAIL  780
AAARKKIRIF ENGFLGGEVV DDVERDEDSE GDEDPEVDDL TTPLSANKSF VHSSKLNTLP  840
VSGKYKVGND VSLTVQNESE KGLSTFSLNG PKDVMAPIII EQCVTHKDEG TNNGNGRDIE  900
IDETKSGESW IQGLTEGEYS HLTVEERLNA LVVLVGIANE GNSIRAVLED RLEAANALKK  960
QMWAEAQLDR SRLKEEFVSK LDFPSLTVGR VETQFASSAV EGSQSPLVLA DSKNKEASPS  1020
NAEDRKPLAE NVENHLSIVL SEKALVVQDL SMNPDNISMQ QHGYASKRSR SQLKAYVTHL  1080
AEEMYIYRSL PLGQDRRRNR YWQFVASASR NDPCSGRIFV ELHDSNWRVI DSEEAFDTLL  1140
SSLDTRGVRE SHLRIMLQKI ESSFKENLQR NLWSPSIVCQ SGTTDDKKAE KDNGNCAASI  1200
DGPSSMLRVS SSDSFDTFSS FRIELGRTSA EKKGALKRYQ DFQNWMWKDC FNSSTLCSMK  1260
YGKKRCEQLL DTCNLCFSSY LSEDTHCLSC HQAFKVDNKN FDFAEHEIQC KEKSFDPGNA  1320
RACDSCLPLG VRLLTALLGS IEVSVPQEAL ESFWMEIRRK DWGVKLIKSS STEELLQRLT  1380
VFESAIKRQR LSSNFETTKE LLGSSVSSGS AAHDSASLGS VSLLPWIPKT SAAMALRLFE  1440
LDASIIYVKN EKPEPSTDKS VKVYMKLPSR YSDFKNEVEI KDVKLEEHNK EIVDLRGKRS  1500
NYKRGRGGRD QGLATKWQRR VPGLKSDTRR QSSSRGVQNL NQGSRQQGRK TNLQASSRGR  1560
RTVRKRRVEK MVAKEPLPGR MTNKVAAPMS YLSKKTAVHN SYVKSFRNLD DEDWSAKRGR  1620
MNAVGDDNSN SMEEAESDDN VEEEVSGQGN WEPRFNGTPN GWNGNSMEVS DDDGDASNGD  1680
ASNGVAAMGD DDSEGDVEMS DRSDREANQV QNDEGLDFAD SDEYSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17683RRLKDKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027776.10.0PREDICTED: uncharacterized protein LOC105127984 isoform X3
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLB9H2Q70.0B9H2Q7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1